Index

A

add_live_xmap() (chimerax.clipper.maps.XmapSet method)

add_static_xmap() (chimerax.clipper.maps.XmapSet method) atom_list_from_sel() (in module chimerax.clipper.util)

C

callback() (chimerax.clipper.mousemodes.ShiftToReferenceAsuMenuEntry method) chimerax.clipper.clipper_mtz.load_hkl_data() (in module chimerax.clipper.maps) chimerax.clipper.maps module chimerax.clipper.mousemodes module chimerax.clipper.symmetry module

chimerax.clipper.util module clip_multiplier (chimerax.clipper.mousemodes.ZoomMouseMode property) ClipPlaneAdjuster (class in chimerax.clipper.mousemodes) ContourSelectedVolume (class in chimerax.clipper.mousemodes) cover_atoms() (chimerax.clipper.maps.MapMgr method) cover_box() (chimerax.clipper.maps.MapMgr method) cover_coords() (chimerax.clipper.maps.MapMgr method) criteria() (chimerax.clipper.mousemodes.ShiftToReferenceAsuMenuEntry method)

D

dangerous (chimerax.clipper.mousemodes.ShiftToReferenceAsuMenuEntry attribute) delete() (chimerax.clipper.maps.MapMgr method) (chimerax.clipper.maps.XmapHandler_Live method) (chimerax.clipper.maps.XmapSet method) (chimerax.clipper.symmetry.SymmetryManager method)

display (chimerax.clipper.maps.MapMgr property) draw_unit_cell_and_special_positions() (chimerax.clipper.symmetry.SymmetryManager method) draw_unit_cell_box() (chimerax.clipper.symmetry.SymmetryManager method)

G

guess_suitable_contour() (in module chimerax.clipper.util)

I

is_probably_fcalc_map() (chimerax.clipper.maps.XmapHandler_Static method)

isolate_and_cover_selection() (chimerax.clipper.symmetry.SymmetryManager method)

L

label() (chimerax.clipper.mousemodes.ShiftToReferenceAsuMenuEntry method)

last_covered_selection (chimerax.clipper.maps.MapMgr property)

M

map_mgr (chimerax.clipper.symmetry.SymmetryManager property) MapMgr (class in chimerax.clipper.maps) module chimerax.clipper.maps chimerax.clipper.mousemodes chimerax.clipper.symmetry chimerax.clipper.util

mouse_double_click() (chimerax.clipper.mousemodes.RotateMouseMode method) mouse_down() (chimerax.clipper.mousemodes.Z_Shift_CofR method) mouse_drag() (chimerax.clipper.mousemodes.Z_Shift_CofR method) mouse_up() (chimerax.clipper.mousemodes.Z_Shift_CofR method)

N

name (chimerax.clipper.maps.XmapSet property) NXmapHandler (class in chimerax.clipper.maps)

nxmapset (chimerax.clipper.maps.MapMgr property) NXmapSet (class in chimerax.clipper.maps)

P

position (chimerax.clipper.symmetry.SymmetryManager property)

R

restore_snapshot() (chimerax.clipper.maps.MapMgr static method) (chimerax.clipper.maps.NXmapHandler static method) (chimerax.clipper.maps.NXmapSet static method) (chimerax.clipper.maps.XmapHandler_Live static method) (chimerax.clipper.maps.XmapHandler_Static static method) (chimerax.clipper.maps.XmapSet static method) (chimerax.clipper.symmetry.SymmetryManager static method)

RotateMouseMode (class in chimerax.clipper.mousemodes)

S

SelectVolumeToContour (class in chimerax.clipper.mousemodes) set_box_limits() (chimerax.clipper.maps.XmapSet method) set_to_default_cartoon() (in module chimerax.clipper.util) ShiftToReferenceAsuMenuEntry (class in chimerax.clipper.mousemodes) spotlight_center (chimerax.clipper.maps.MapMgr property) spotlight_mode (chimerax.clipper.maps.MapMgr property) spotlight_radius (chimerax.clipper.maps.MapMgr property)

stats (chimerax.clipper.maps.XmapHandler_Live property) (chimerax.clipper.maps.XmapHandler_Static property) stepper (chimerax.clipper.symmetry.SymmetryManager property) structure (chimerax.clipper.symmetry.SymmetryManager property) swap_model() (chimerax.clipper.symmetry.SymmetryManager method) swap_model_from_file() (chimerax.clipper.symmetry.SymmetryManager method) SymmetryManager (class in chimerax.clipper.symmetry)

T

take_snapshot() (chimerax.clipper.maps.MapMgr method) (chimerax.clipper.maps.NXmapHandler method) (chimerax.clipper.maps.NXmapSet method) (chimerax.clipper.maps.XmapHandler_Live method) (chimerax.clipper.maps.XmapHandler_Static method) (chimerax.clipper.maps.XmapSet method) (chimerax.clipper.symmetry.SymmetryManager method)

U

Unit_Cell (class in chimerax.clipper.symmetry)

update_spotlight() (chimerax.clipper.maps.MapMgr method)

W

wheel() (chimerax.clipper.mousemodes.ClipPlaneAdjuster method) (chimerax.clipper.mousemodes.ContourSelectedVolume method) (chimerax.clipper.mousemodes.SelectVolumeToContour method) (chimerax.clipper.mousemodes.Z_Shift_CofR method)

X

XmapHandler_Live (class in chimerax.clipper.maps) XmapHandler_Static (class in chimerax.clipper.maps)

XmapSet (class in chimerax.clipper.maps) xmapsets (chimerax.clipper.maps.MapMgr property)

Z

Z_Shift_CofR (class in chimerax.clipper.mousemodes)

ZoomMouseMode (class in chimerax.clipper.mousemodes)